1 HisKA#1
183-243 aa · 61 aa · 15.3% of protein
Raw token
HisKA:183:0.0000000000000323:243:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS08085
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS08085Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 398 aa (42.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
288-393 aa · 106 aa · 26.6% of protein
Raw token
HATPase_c:288:2.11e-24:393:106:109- Raw architecture: HisKA:183:0.0000000000000323:243:61:64#HATPase_c:288:2.11e-24:393:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1780187-1782056Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_08085RefSeq proteinWP_225305339.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00039Context members
LC479_RS08080LC479_RS08085
Partner locus tags
LC479_RS08080LC479_RS08085
Partner old locus tags
LC479_08080LC479_08085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_225305339.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ0BX25Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ0BX25_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS08085Primary locus identifier stored in the genes table.
Old locus tagLC479_08085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 780 860-1 782 056 nt1 197 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 780 187-1 782 056 ntGCF_020509505::NZ_JAIXOC010000001.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 780 187-1 782 056 nt1 870 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 780 187 nt1 782 056 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS08080GCF_020509505#LC479_RS08080
RROmpR
1 780 187-1 780 867 nt · Forward (+)
LC479_RS08085GCF_020509505#LC479_RS08085
HKClassicCurrent focus
1 780 860-1 782 056 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS17325Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2462147
Simplified PFAM architecture for HKOC_2462147
PFAM domain coverage: 166 / 398 aa (41.7%)
1 aa398 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[183-243] | HATPase_c[289-393]
- Domain count: 2
- Matched identifier: HKOC_2462147
- Positioned domains: HisKA 183-243 ; HATPase_c 289-393
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS17325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key