1 HisKA#1
450-516 aa · 67 aa · 6.9% of protein
Raw token
HisKA:450:2.6e-17:516:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS07995
Histidine kinase, Hybrid
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeHybridLength972 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020509505#LC479_RS07995Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length972 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage418 / 972 aa (43.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa972 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
563-678 aa · 116 aa · 11.9% of protein
Raw token
HATPase_c:563:1.44e-30:678:116:1093 Response_reg#3
696-812 aa · 117 aa · 12.0% of protein
Raw token
Response_reg:696:1.3e-28:812:117:1114 Response_reg#4
839-956 aa · 118 aa · 12.1% of protein
Raw token
Response_reg:839:1.44e-29:956:118:111- Raw architecture: HisKA:450:2.6e-17:516:67:64#HATPase_c:563:1.44e-30:678:116:109#Response_reg:696:1.3e-28:812:117:111#Response_reg:839:1.44e-29:956:118:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020509505::NZ_JAIXOC010000001.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1762680-1765598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_07995RefSeq proteinWP_103732303.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00038Context members
LC479_RS07995
Partner locus tags
LC479_RS07995
Partner old locus tags
LC479_07995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732303.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FF31Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FF31_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS07995Primary locus identifier stored in the genes table.
Old locus tagLC479_07995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 762 680-1 765 598 nt2 919 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 762 680-1 765 598 ntGCF_020509505::NZ_JAIXOC010000001.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 762 680-1 765 598 nt2 919 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 762 680 nt1 765 598 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC479_RS07995GCF_020509505#LC479_RS07995
HKHybridCurrent focus
1 762 680-1 765 598 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS17420Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0310696
Simplified PFAM architecture for HKOC_0310696
PFAM domain coverage: 416 / 972 aa (42.8%)
1 aa972 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[450-516] | HATPase_c[563-678] | Response_reg[696-811] | Response_reg[839-955]
- Domain count: 4
- Matched identifier: HKOC_0310696
- Positioned domains: HisKA 450-516 ; HATPase_c 563-678 ; Response_reg 696-811 ; Response_reg 839-955
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS17420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key