1 dCache_1#1
197-292 aa · 96 aa · 15.9% of protein
Raw token
dCache_1:197:0.000000000415:292:99:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS05550
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS05550Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage350 / 604 aa (57.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation4 items
2 HAMP#2
311-380 aa · 70 aa · 11.6% of protein
Raw token
HAMP:311:0.0000000000000735:380:70:693 His_kinase#3
395-474 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:395:4.29e-28:474:80:804 HATPase_c#4
494-597 aa · 104 aa · 17.2% of protein
Raw token
HATPase_c:494:0.000000000000439:597:105:109- Raw architecture: dCache_1:197:0.000000000415:292:99:195#HAMP:311:0.0000000000000735:380:70:69#His_kinase:395:4.29e-28:474:80:80#HATPase_c:494:0.000000000000439:597:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1228339-1231718Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_05550RefSeq proteinWP_103731566.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00027Context members
LC479_RS05550LC479_RS05555
Partner locus tags
LC479_RS05550LC479_RS05555
Partner old locus tags
LC479_05550LC479_05555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731566.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FLF7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FLF7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS05550Primary locus identifier stored in the genes table.
Old locus tagLC479_05550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 228 339-1 230 153 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 228 339-1 231 718 ntGCF_020509505::NZ_JAIXOC010000001.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 228 339-1 231 718 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 228 339 nt1 231 718 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS05550GCF_020509505#LC479_RS05550
HKClassicCurrent focus
1 228 339-1 230 153 nt · Forward (+)
LC479_RS05555GCF_020509505#LC479_RS05555
RRunclassified
1 230 156-1 231 718 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS21445Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1033768
Simplified PFAM architecture for HKOC_1033768
PFAM domain coverage: 478 / 604 aa (79.1%)
1 aa604 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[50-293] | HAMP[330-380] | His_kinase[396-473] | HATPase_c[494-598]
- Domain count: 4
- Matched identifier: HKOC_1033768
- Positioned domains: dCache_1 50-293 ; HAMP 330-380 ; His_kinase 396-473 ; HATPase_c 494-598
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS21445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key