1 Response_reg#1
8-117 aa · 110 aa · 15.8% of protein
Raw token
Response_reg:8:1.49e-28:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS05215
Response regulator, PleD_VieA family
Blautia sp. RD014232 · GCF_020509505
ClassRRTypePleD_VieALength696 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020509505#LC479_RS05215Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regPAS_3GGDEFEAL
Protein length696 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage576 / 696 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 PAS_3,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa696 aa
Domain-by-domain annotation4 items
2 PAS_3#2
163-249 aa · 87 aa · 12.5% of protein
Raw token
PAS_3:163:0.00000000153:249:87:893 GGDEF#3
276-418 aa · 143 aa · 20.5% of protein
Raw token
GGDEF:276:1.42e-18:418:154:1604 EAL#4
444-679 aa · 236 aa · 33.9% of protein
Raw token
EAL:444:4.71e-77:679:236:235- Raw architecture: Response_reg:8:1.49e-28:117:112:111#PAS_3:163:0.00000000153:249:87:89#GGDEF:276:1.42e-18:418:154:160#EAL:444:4.71e-77:679:236:235
- Domain description: 1 Response_reg,1 PAS_3,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020509505::NZ_JAIXOC010000001.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1152013-1154103Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_05215RefSeq proteinWP_033142577.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00025Context members
LC479_RS05215
Partner locus tags
LC479_RS05215
Partner old locus tags
LC479_05215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033142577.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DJY3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DJY3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS05215Primary locus identifier stored in the genes table.
Old locus tagLC479_05215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 152 013-1 154 103 nt2 091 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 152 013-1 154 103 ntGCF_020509505::NZ_JAIXOC010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 152 013-1 154 103 nt2 091 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 152 013 nt1 154 103 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC479_RS05215GCF_020509505#LC479_RS05215
RRPleD_VieACurrent focus
1 152 013-1 154 103 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS21110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + PAS_3 + GGDEF + EAL4 domains in the representative PFAM annotation.
PFAM architecture for RROC_0030620
Simplified PFAM architecture for RROC_0030620
PFAM domain coverage: 573 / 696 aa (82.3%)
1 aa696 aa
Response_regPAS_3GGDEFEAL
- Simplified architecture: Response_reg + PAS_3 + GGDEF + EAL
- Raw architecture: Response_reg[8-116] | PAS_3[165-247] | GGDEF[276-420] | EAL[444-679]
- Domain count: 4
- Matched identifier: RROC_0030620
- Positioned domains: Response_reg 8-116 ; Response_reg 8-116 ; PAS_3 165-247 ; PAS_3 165-247 ; GGDEF 276-420 ; GGDEF 276-420 ; EAL 444-679 ; EAL 444-679
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS21110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key