1 HAMP#1
266-334 aa · 69 aa · 12.1% of protein
Raw token
HAMP:266:0.000000000193:334:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS02935
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS02935Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage208 / 571 aa (36.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation3 items
2 His_kinase#2
351-430 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:351:2.76e-19:430:80:803 HATPase_c#3
472-530 aa · 59 aa · 10.3% of protein
Raw token
HATPase_c:472:0.0000499:530:62:109- Raw architecture: HAMP:266:0.000000000193:334:69:69#His_kinase:351:2.76e-19:430:80:80#HATPase_c:472:0.0000499:530:62:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span674976-678289Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_02935RefSeq proteinWP_054352191.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00020Context members
LC479_RS02935LC479_RS02940
Partner locus tags
LC479_RS02935LC479_RS02940
Partner old locus tags
LC479_02935LC479_02940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054352191.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FA06Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FA06_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS02935Primary locus identifier stored in the genes table.
Old locus tagLC479_02935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval674 976-676 691 nt1 716 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span674 976-678 289 ntGCF_020509505::NZ_JAIXOC010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span674 976-678 289 nt3 314 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
674 976 nt678 289 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS02935GCF_020509505#LC479_RS02935
HKClassicCurrent focus
674 976-676 691 nt · Forward (+)
LC479_RS02940GCF_020509505#LC479_RS02940
RRunclassified
676 697-678 289 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS00270Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1208423
Simplified PFAM architecture for HKOC_1208423
PFAM domain coverage: 127 / 571 aa (22.2%)
1 aa571 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[284-334] | His_kinase[352-427]
- Domain count: 2
- Matched identifier: HKOC_1208423
- Positioned domains: HAMP 284-334 ; His_kinase 352-427
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS00270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key