1 dCache_1#1
143-281 aa · 139 aa · 23.5% of protein
Raw token
dCache_1:143:0.0000111:281:163:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS02485
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS02485Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage390 / 592 aa (65.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation4 items
2 HAMP#2
298-367 aa · 70 aa · 11.8% of protein
Raw token
HAMP:298:0.0000000000000158:367:70:693 His_kinase#3
382-460 aa · 79 aa · 13.3% of protein
Raw token
His_kinase:382:6.68e-30:460:80:804 HATPase_c#4
479-580 aa · 102 aa · 17.2% of protein
Raw token
HATPase_c:479:0.0000000000000553:580:106:109- Raw architecture: dCache_1:143:0.0000111:281:163:195#HAMP:298:0.0000000000000158:367:70:69#His_kinase:382:6.68e-30:460:80:80#HATPase_c:479:0.0000000000000553:580:106:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span565307-567926Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_02485RefSeq proteinWP_118593770.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00015Context members
LC479_RS02480LC479_RS02485
Partner locus tags
LC479_RS02480LC479_RS02485
Partner old locus tags
LC479_02480LC479_02485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118593770.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F9Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F9Q0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS02485Primary locus identifier stored in the genes table.
Old locus tagLC479_02485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval566 148-567 926 nt1 779 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span565 307-567 926 ntGCF_020509505::NZ_JAIXOC010000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span565 307-567 926 nt2 620 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
565 307 nt567 926 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS02480GCF_020509505#LC479_RS02480
RRunclassified
565 307-566 143 nt · Forward (+)
LC479_RS02485GCF_020509505#LC479_RS02485
HKClassicCurrent focus
566 148-567 926 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS00705Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1100600
Simplified PFAM architecture for HKOC_1100600
PFAM domain coverage: 232 / 592 aa (39.2%)
1 aa592 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[317-366] | His_kinase[382-460] | HATPase_c[479-581]
- Domain count: 3
- Matched identifier: HKOC_1100600
- Positioned domains: HAMP 317-366 ; His_kinase 382-460 ; HATPase_c 479-581
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS00705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key