1 PAS_3#1
188-271 aa · 84 aa · 7.7% of protein
Raw token
PAS_3:188:0.00000000000000279:271:84:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS01700
Histidine kinase, Hybrid
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeHybridLength1092 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020509505#LC479_RS01700Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3PAS_9HisKAHATPase_cResponse_reg
Protein length1092 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage598 / 1092 aa (54.8%)Merged over positioned domains only.
Domain description1 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1092 aa
Domain-by-domain annotation6 items
2 PAS_9#2
309-415 aa · 107 aa · 9.8% of protein
Raw token
PAS_9:309:0.000000286:415:108:1023 HisKA#3
579-645 aa · 67 aa · 6.1% of protein
Raw token
HisKA:579:5.55e-17:645:67:644 HATPase_c#4
692-807 aa · 116 aa · 10.6% of protein
Raw token
HATPase_c:692:7.8e-32:807:116:1095 Response_reg#5
831-936 aa · 106 aa · 9.7% of protein
Raw token
Response_reg:831:6.06e-22:936:106:1116 Response_reg#6
971-1088 aa · 118 aa · 10.8% of protein
Raw token
Response_reg:971:1.16e-30:1088:118:111- Raw architecture: PAS_3:188:0.00000000000000279:271:84:89#PAS_9:309:0.000000286:415:108:102#HisKA:579:5.55e-17:645:67:64#HATPase_c:692:7.8e-32:807:116:109#Response_reg:831:6.06e-22:936:106:111#Response_reg:971:1.16e-30:1088:118:111
- Domain description: 1 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020509505::NZ_JAIXOC010000001.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span387732-391010Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_01700RefSeq proteinWP_033142323.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00011Context members
LC479_RS01700
Partner locus tags
LC479_RS01700
Partner old locus tags
LC479_01700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033142323.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FAF8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FAF8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS01700Primary locus identifier stored in the genes table.
Old locus tagLC479_01700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval387 732-391 010 nt3 279 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span387 732-391 010 ntGCF_020509505::NZ_JAIXOC010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span387 732-391 010 nt3 279 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
387 732 nt391 010 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC479_RS01700GCF_020509505#LC479_RS01700
HKHybridCurrent focus
387 732-391 010 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479705#DWV84_RS01530Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0233860
Simplified PFAM architecture for HKOC_0233860
PFAM domain coverage: 591 / 1092 aa (54.1%)
1 aa1092 aa
PAS_3PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[188-269] | PAS_9[320-415] | HisKA[579-645] | HATPase_c[692-807] | Response_reg[831-943] | Response_reg[971-1087]
- Domain count: 6
- Matched identifier: HKOC_0233860
- Positioned domains: PAS_3 188-269 ; PAS_9 320-415 ; HisKA 579-645 ; HATPase_c 692-807 ; Response_reg 831-943 ; Response_reg 971-1087
Cluster members and taxonomy
Representative gene: GCF_003479705#DWV84_RS01530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key