1 HAMP#1
274-346 aa · 73 aa · 12.7% of protein
Raw token
HAMP:274:0.00000000124:346:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS01125
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS01125Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 577 aa (44.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
362-440 aa · 79 aa · 13.7% of protein
Raw token
His_kinase:362:7.86e-27:440:80:803 HATPase_c#3
460-565 aa · 106 aa · 18.4% of protein
Raw token
HATPase_c:460:0.000000284:565:108:109- Raw architecture: HAMP:274:0.00000000124:346:73:69#His_kinase:362:7.86e-27:440:80:80#HATPase_c:460:0.000000284:565:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span261120-264375Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_01125RefSeq proteinWP_103732746.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00005Context members
LC479_RS01125LC479_RS01130
Partner locus tags
LC479_RS01125LC479_RS01130
Partner old locus tags
LC479_01125LC479_01130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732746.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FAP6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FAP6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS01125Primary locus identifier stored in the genes table.
Old locus tagLC479_01125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval261 120-262 853 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span261 120-264 375 ntGCF_020509505::NZ_JAIXOC010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span261 120-264 375 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
261 120 nt264 375 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS01125GCF_020509505#LC479_RS01125
HKClassicCurrent focus
261 120-262 853 nt · Forward (+)
LC479_RS01130GCF_020509505#LC479_RS01130
RRunclassified
262 825-264 375 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS02100Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178477
Simplified PFAM architecture for HKOC_1178477
PFAM domain coverage: 232 / 577 aa (40.2%)
1 aa577 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[297-345] | His_kinase[362-439] | HATPase_c[460-564]
- Domain count: 3
- Matched identifier: HKOC_1178477
- Positioned domains: HAMP 297-345 ; His_kinase 362-439 ; HATPase_c 460-564
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS02100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key