1 HAMP#1
275-344 aa · 70 aa · 12.4% of protein
Raw token
HAMP:275:0.0000000000000433:344:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS00955
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength564 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020509505#LC479_RS00955Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length564 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 564 aa (44.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa564 aa
Domain-by-domain annotation3 items
2 His_kinase#2
359-438 aa · 80 aa · 14.2% of protein
Raw token
His_kinase:359:2.72e-24:438:80:803 HATPase_c#3
455-553 aa · 99 aa · 17.6% of protein
Raw token
HATPase_c:455:2.87e-17:553:105:109- Raw architecture: HAMP:275:0.0000000000000433:344:70:69#His_kinase:359:2.72e-24:438:80:80#HATPase_c:455:2.87e-17:553:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020509505::NZ_JAIXOC010000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span219396-221090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_00955RefSeq proteinWP_158587222.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00004Context members
LC479_RS00955
Partner locus tags
LC479_RS00955
Partner old locus tags
LC479_00955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158587222.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FB55Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FB55_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS00955Primary locus identifier stored in the genes table.
Old locus tagLC479_00955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval219 396-221 090 nt1 695 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span219 396-221 090 ntGCF_020509505::NZ_JAIXOC010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span219 396-221 090 nt1 695 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 396 nt221 090 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC479_RS00955GCF_020509505#LC479_RS00955
HKClassicCurrent focus
219 396-221 090 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS02265Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1240944
Simplified PFAM architecture for HKOC_1240944
PFAM domain coverage: 226 / 564 aa (40.1%)
1 aa564 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[295-343] | His_kinase[360-438] | HATPase_c[456-553]
- Domain count: 3
- Matched identifier: HKOC_1240944
- Positioned domains: HAMP 295-343 ; His_kinase 360-438 ; HATPase_c 456-553
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS02265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key