1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:9.28e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS00245
Response regulator OmpR family
Blautia sp. RD014232 · GCF_020509505
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS00245Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:153:3.55e-29:229:77:77- Raw architecture: Response_reg:5:9.28e-37:114:111:111#Trans_reg_C:153:3.55e-29:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40320-43263Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_00245RefSeq proteinWP_054353759.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00001Context members
LC479_RS00245LC479_RS00250
Partner locus tags
LC479_RS00245LC479_RS00250
Partner old locus tags
LC479_00245LC479_00250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054353759.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FL96Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FL96_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS00245Primary locus identifier stored in the genes table.
Old locus tagLC479_00245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval40 320-41 018 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 320-43 263 ntGCF_020509505::NZ_JAIXOC010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span40 320-43 263 nt2 944 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 320 nt43 263 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS00245GCF_020509505#LC479_RS00245
RROmpRCurrent focus
40 320-41 018 nt · Forward (+)
LC479_RS00250GCF_020509505#LC479_RS00250
HKClassic
40 993-43 263 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS11835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129474
Simplified PFAM architecture for RROC_1129474
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1129474
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS11835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key