1 Response_reg#1
6-118 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:6:1.77e-28:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LA365_RS12200
Response regulator NarL family
Clostridioides difficile · GCF_020297505
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020297505#LA365_RS12200Stable P2CS identifier used across views.
GenomeGCF_020297505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 215 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-207 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:153:7.67e-21:207:55:58- Raw architecture: Response_reg:6:1.77e-28:118:113:111#HTH_LUXR:153:7.67e-21:207:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020297505::NZ_JAIWZD010000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span312229-314032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLA365_12200RefSeq proteinWP_009905386.1
Context group ID
GCF_020297505::NZ_JAIWZD010000003.1::G00005Context members
LA365_RS12195LA365_RS12200
Partner locus tags
LA365_RS12195LA365_RS12200
Partner old locus tags
LA365_12195LA365_12200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009905386.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GVP8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GVP8_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLA365_RS12200Primary locus identifier stored in the genes table.
Old locus tagLA365_12200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIWZD010000003.1Sequence record reported by the local genomic context database.
Genomic interval313 385-314 032 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span312 229-314 032 ntGCF_020297505::NZ_JAIWZD010000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020297505::NZ_JAIWZD010000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIWZD010000003.1All displayed genes belong to this local TCS context.
Neighborhood span312 229-314 032 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
312 229 nt314 032 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LA365_RS12195GCF_020297505#LA365_RS12195
HKClassic
312 229-313 392 nt · Forward (+)
LA365_RS12200GCF_020297505#LA365_RS12200
RRNarLCurrent focus
313 385-314 032 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0206210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906741
Simplified PFAM architecture for RROC_1906741
PFAM domain coverage: 168 / 215 aa (78.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1906741
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GerE 152-207 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0206210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020297505
AssemblyASM2029750v1 · Contighaploid
Genome composition4 000 394 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key