1 HisKA#1
309-375 aa · 67 aa · 12.6% of protein
Raw token
HisKA:309:0.000000000000009:375:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LA365_RS00790
Histidine kinase, Classic
Clostridioides difficile · GCF_020297505
ClassHKTypeClassicLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020297505#LA365_RS00790Stable P2CS identifier used across views.
GenomeGCF_020297505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 530 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
428-513 aa · 86 aa · 16.2% of protein
Raw token
HATPase_c:428:0.0000000975:513:90:109- Raw architecture: HisKA:309:0.000000000000009:375:67:64#HATPase_c:428:0.0000000975:513:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020297505::NZ_JAIWZD010000001.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span167167-169444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLA365_00790RefSeq proteinWP_003423136.1
Context group ID
GCF_020297505::NZ_JAIWZD010000001.1::G00041Context members
LA365_RS00790LA365_RS00795
Partner locus tags
LA365_RS00790LA365_RS00795
Partner old locus tags
LA365_00790LA365_00795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423136.1Primary protein accession used for annex mappings.
UniProt accessionD5Q2Z1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q2Z1_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLA365_RS00790Primary locus identifier stored in the genes table.
Old locus tagLA365_00790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIWZD010000001.1Sequence record reported by the local genomic context database.
Genomic interval167 167-168 759 nt1 593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span167 167-169 444 ntGCF_020297505::NZ_JAIWZD010000001.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020297505::NZ_JAIWZD010000001.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIWZD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span167 167-169 444 nt2 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
167 167 nt169 444 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LA365_RS00790GCF_020297505#LA365_RS00790
HKClassicCurrent focus
167 167-168 759 nt · Reverse (-)
LA365_RS00795GCF_020297505#LA365_RS00795
RROmpR
168 728-169 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0211330Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1355523
Simplified PFAM architecture for HKOC_1355523
PFAM domain coverage: 194 / 530 aa (36.6%)
1 aa530 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[255-297] | HisKA[309-375] | HATPase_c[427-510]
- Domain count: 3
- Matched identifier: HKOC_1355523
- Positioned domains: HAMP 255-297 ; HisKA 309-375 ; HATPase_c 427-510
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0211330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020297505
AssemblyASM2029750v1 · Contighaploid
Genome composition4 000 394 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key