1 Response_reg#1
5-104 aa · 100 aa · 52.4% of protein
Raw token
Response_reg:5:3.92e-31:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LA362_RS09025
Response regulator, AmiR_NasR family
Clostridioides difficile · GCF_020097215
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020097215#LA362_RS09025Stable P2CS identifier used across views.
GenomeGCF_020097215Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 191 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:3.06e-20:186:49:49- Raw architecture: Response_reg:5:3.92e-31:104:100:111#ANTAR:138:3.06e-20:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020097215::NZ_CP083616.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2054600-2056577Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLA362_09050RefSeq proteinWP_021359294.1
Context group ID
GCF_020097215::NZ_CP083616.1::G00025Context members
LA362_RS09020LA362_RS09025
Partner locus tags
LA362_RS09020LA362_RS09025
Partner old locus tags
LA362_09045LA362_09050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021359294.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q7ZXK9Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q7ZXK9_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLA362_RS09025Primary locus identifier stored in the genes table.
Old locus tagLA362_09050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP083616.1Sequence record reported by the local genomic context database.
Genomic interval2 056 002-2 056 577 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 054 600-2 056 577 ntGCF_020097215::NZ_CP083616.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020097215::NZ_CP083616.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP083616.1All displayed genes belong to this local TCS context.
Neighborhood span2 054 600-2 056 577 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 054 600 nt2 056 577 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LA362_RS09020GCF_020097215#LA362_RS09020
HKClassic
2 054 600-2 056 009 nt · Reverse (-)
LA362_RS09025GCF_020097215#LA362_RS09025
RRAmiR_NasRCurrent focus
2 056 002-2 056 577 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030250965#QQO51_RS11900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2157005
Simplified PFAM architecture for RROC_2157005
PFAM domain coverage: 164 / 196 aa (83.7%)
1 aa196 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[10-120] | ANTAR[139-191]
- Domain count: 2
- Matched identifier: RROC_2157005
- Positioned domains: Response_reg 10-120 ; ANTAR 139-191
Cluster members and taxonomy
Representative gene: GCF_030250965#QQO51_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020097215
AssemblyASM2009721v1 · Complete Genomehaploid
Genome composition4 375 351 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key