1 HAMP#1
230-299 aa · 70 aa · 11.4% of protein
Raw token
HAMP:230:0.0000000000000011:299:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFAD42_RS01875
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_019972965
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019972965#BIFAD42_RS01875Stable P2CS identifier used across views.
GenomeGCF_019972965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 615 aa (46.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
310-379 aa · 70 aa · 11.4% of protein
Raw token
HisKA:310:1.47e-16:379:70:643 HATPase_c#3
443-590 aa · 148 aa · 24.1% of protein
Raw token
HATPase_c:443:4.01e-21:590:148:109- Raw architecture: HAMP:230:0.0000000000000011:299:70:69#HisKA:310:1.47e-16:379:70:64#HATPase_c:443:4.01e-21:590:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019972965::NZ_BPPZ01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span416772-419359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFAD42_03530RefSeq proteinWP_373367821.1
Context group ID
GCF_019972965::NZ_BPPZ01000001.1::G00005Context members
BIFAD42_RS01870BIFAD42_RS01875
Partner locus tags
BIFAD42_RS01870BIFAD42_RS01875
Partner old locus tags
BIFAD42_03520BIFAD42_03530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_373367821.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4VLP6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4VLP6_BIFADDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFAD42_RS01875Primary locus identifier stored in the genes table.
Old locus tagBIFAD42_03530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BPPZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval417 512-419 359 nt1 848 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span416 772-419 359 ntGCF_019972965::NZ_BPPZ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019972965::NZ_BPPZ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BPPZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span416 772-419 359 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
416 772 nt419 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BIFAD42_RS01870GCF_019972965#BIFAD42_RS01870
RROmpR
416 772-417 503 nt · Forward (+)
BIFAD42_RS01875GCF_019972965#BIFAD42_RS01875
HKClassicCurrent focus
417 512-419 359 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019972965#BIFAD42_RS01875The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0989974
Simplified PFAM architecture for HKOC_0989974
PFAM domain coverage: 269 / 615 aa (43.7%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[247-299] | HisKA[311-379] | HATPase_c[443-589]
- Domain count: 3
- Matched identifier: HKOC_0989974
- Positioned domains: HAMP 247-299 ; HisKA 311-379 ; HATPase_c 443-589
Cluster members and taxonomy
Representative gene: GCF_019972965#BIFAD42_RS01875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_019972965
AssemblyASM1997296v1 · Contighaploid
Genome composition2 392 818 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key