1 Response_reg#1
12-97 aa · 86 aa · 41.1% of protein
Raw token
Response_reg:12:0.00000000000000353:97:90:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFAD42_RS00015
Response regulator NarL family
Bifidobacterium adolescentis · GCF_019972965
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019972965#BIFAD42_RS00015Stable P2CS identifier used across views.
GenomeGCF_019972965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 209 aa (67.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-202 aa · 56 aa · 26.8% of protein
Raw token
HTH_LUXR:147:4.37e-16:202:56:58- Raw architecture: Response_reg:12:0.00000000000000353:97:90:111#HTH_LUXR:147:4.37e-16:202:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019972965::NZ_BPPZ01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1748-2377Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFAD42_00040RefSeq proteinWP_223894956.1
Context group ID
GCF_019972965::NZ_BPPZ01000001.1::G00001Context members
BIFAD42_RS00015
Partner locus tags
BIFAD42_RS00015
Partner old locus tags
BIFAD42_00040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_223894956.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5AEE7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5AEE7_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFAD42_RS00015Primary locus identifier stored in the genes table.
Old locus tagBIFAD42_00040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BPPZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 748-2 377 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 748-2 377 ntGCF_019972965::NZ_BPPZ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019972965::NZ_BPPZ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BPPZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 748-2 377 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 748 nt2 377 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BIFAD42_RS00015GCF_019972965#BIFAD42_RS00015
RRNarLCurrent focus
1 748-2 377 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019972965#BIFAD42_RS00015The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2049528
Simplified PFAM architecture for RROC_2049528
PFAM domain coverage: 145 / 209 aa (69.4%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-101] | GerE[148-202]
- Domain count: 2
- Matched identifier: RROC_2049528
- Positioned domains: Response_reg 12-101 ; GerE 148-202
Cluster members and taxonomy
Representative gene: GCF_019972965#BIFAD42_RS00015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_019972965
AssemblyASM1997296v1 · Contighaploid
Genome composition2 392 818 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key