1 Response_reg#1
4-111 aa · 108 aa · 49.8% of protein
Raw token
Response_reg:4:1.72e-31:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HCG64_RS03845
Response regulator OmpR family
Coprobacillus sp. K06 · GCF_019734325
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019734325#HCG64_RS03845Stable P2CS identifier used across views.
GenomeGCF_019734325Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 217 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:1.38e-23:214:78:77- Raw architecture: Response_reg:4:1.72e-31:111:110:111#Trans_reg_C:142:1.38e-23:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019734325::NZ_JAASHF010000006.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29982-30635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHCG64_03875RefSeq proteinWP_178404641.1
Context group ID
GCF_019734325::NZ_JAASHF010000006.1::G00015Context members
HCG64_RS03845
Partner locus tags
HCG64_RS03845
Partner old locus tags
HCG64_03875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178404641.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHCG64_RS03845Primary locus identifier stored in the genes table.
Old locus tagHCG64_03875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAASHF010000006.1Sequence record reported by the local genomic context database.
Genomic interval29 982-30 635 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 982-30 635 ntGCF_019734325::NZ_JAASHF010000006.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019734325::NZ_JAASHF010000006.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAASHF010000006.1All displayed genes belong to this local TCS context.
Neighborhood span29 982-30 635 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 982 nt30 635 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HCG64_RS03845GCF_019734325#HCG64_RS03845
RROmpRCurrent focus
29 982-30 635 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019734325#HCG64_RS03845The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1861457
Simplified PFAM architecture for RROC_1861457
PFAM domain coverage: 180 / 217 aa (82.9%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1861457
- Positioned domains: Response_reg 4-110 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_019734325#HCG64_RS03845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 718 930 · GCF_019734325
AssemblyASM1973432v1 · Scaffoldhaploid
Genome composition2 484 612 bp · 34,0% GCCoprobacillus sp. K06
Signal transduction countsGenes 32 · HK 13 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key