1 Response_reg#1
3-103 aa · 101 aa · 46.1% of protein
Raw token
Response_reg:3:8.65e-25:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HCH10_RS08495
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_019731715
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019731715#HCH10_RS08495Stable P2CS identifier used across views.
GenomeGCF_019731715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 219 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-213 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:158:3.11e-21:213:56:58- Raw architecture: Response_reg:3:8.65e-25:103:101:111#HTH_LUXR:158:3.11e-21:213:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019731715::NZ_JAASIV010000012.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7221-9229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHCH10_08485RefSeq proteinWP_033524130.1
Context group ID
GCF_019731715::NZ_JAASIV010000012.1::G00003Context members
HCH10_RS08490HCH10_RS08495
Partner locus tags
HCH10_RS08490HCH10_RS08495
Partner old locus tags
HCH10_08480HCH10_08485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033524130.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5HMJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5HMJ5_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHCH10_RS08495Primary locus identifier stored in the genes table.
Old locus tagHCH10_08485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAASIV010000012.1Sequence record reported by the local genomic context database.
Genomic interval8 570-9 229 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 221-9 229 ntGCF_019731715::NZ_JAASIV010000012.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019731715::NZ_JAASIV010000012.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAASIV010000012.1All displayed genes belong to this local TCS context.
Neighborhood span7 221-9 229 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 221 nt9 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HCH10_RS08490GCF_019731715#HCH10_RS08490
HKClassic
7 221-8 570 nt · Forward (+)
HCH10_RS08495GCF_019731715#HCH10_RS08495
RRNarLCurrent focus
8 570-9 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS02845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767696
Simplified PFAM architecture for RROC_1767696
PFAM domain coverage: 156 / 219 aa (71.2%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1767696
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS02845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_019731715
AssemblyASM1973171v1 · Scaffoldhaploid
Genome composition2 194 175 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key