1 Response_reg#1
13-122 aa · 110 aa · 45.1% of protein
Raw token
Response_reg:13:2.58e-37:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HCH10_RS04080
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_019731715
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019731715#HCH10_RS04080Stable P2CS identifier used across views.
GenomeGCF_019731715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 244 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-239 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:163:3.45e-31:239:77:77- Raw architecture: Response_reg:13:2.58e-37:122:111:111#Trans_reg_C:163:3.45e-31:239:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019731715::NZ_JAASIV010000004.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33744-36162Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHCH10_04070RefSeq proteinWP_311774987.1
Context group ID
GCF_019731715::NZ_JAASIV010000004.1::G00010Context members
HCH10_RS04080HCH10_RS04085
Partner locus tags
HCH10_RS04080HCH10_RS04085
Partner old locus tags
HCH10_04070HCH10_04075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_311774987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHCH10_RS04080Primary locus identifier stored in the genes table.
Old locus tagHCH10_04070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAASIV010000004.1Sequence record reported by the local genomic context database.
Genomic interval33 744-34 478 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 744-36 162 ntGCF_019731715::NZ_JAASIV010000004.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019731715::NZ_JAASIV010000004.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAASIV010000004.1All displayed genes belong to this local TCS context.
Neighborhood span33 744-36 162 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 744 nt36 162 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HCH10_RS04080GCF_019731715#HCH10_RS04080
RROmpRCurrent focus
33 744-34 478 nt · Forward (+)
HCH10_RS04085GCF_019731715#HCH10_RS04085
HKClassic
34 492-36 162 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019731715#HCH10_RS04080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0815106
Simplified PFAM architecture for RROC_0815106
PFAM domain coverage: 185 / 244 aa (75.8%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-239]
- Domain count: 2
- Matched identifier: RROC_0815106
- Positioned domains: Response_reg 13-122 ; Trans_reg_C 165-239
Cluster members and taxonomy
Representative gene: GCF_019731715#HCH10_RS04080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_019731715
AssemblyASM1973171v1 · Scaffoldhaploid
Genome composition2 194 175 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key