1 HAMP#1
178-245 aa · 68 aa · 14.4% of protein
Raw token
HAMP:178:0.0000000118:245:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVC82_RS01105
Histidine kinase, Classic
Blautia sp. · GCF_019424595
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_019424595#QVC82_RS01105Stable P2CS identifier used across views.
GenomeGCF_019424595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 473 aa (49.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
257-317 aa · 61 aa · 12.9% of protein
Raw token
HisKA:257:0.000000000023:317:61:643 HATPase_c#3
370-472 aa · 103 aa · 21.8% of protein
Raw token
HATPase_c:370:2.54e-26:472:106:109- Raw architecture: HAMP:178:0.0000000118:245:68:69#HisKA:257:0.000000000023:317:61:64#HATPase_c:370:2.54e-26:472:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_019424595::NZ_JAHYZD010000006.1::G00051
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span9845-12606Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019424595::NZ_JAHYZD010000006.1::G00051Context members
QVC82_RS01105QVC82_RS01110QVC82_RS01115
Partner locus tags
QVC82_RS01105QVC82_RS01110QVC82_RS01115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287642592.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVC82_RS01105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAHYZD010000006.1Sequence record reported by the local genomic context database.
Genomic interval9 845-11 266 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 845-12 606 ntGCF_019424595::NZ_JAHYZD010000006.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019424595::NZ_JAHYZD010000006.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHYZD010000006.1All displayed genes belong to this local TCS context.
Neighborhood span9 845-12 606 nt2 762 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 845 nt12 606 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QVC82_RS01105GCF_019424595#QVC82_RS01105
HKClassicCurrent focus
9 845-11 266 nt · Reverse (-)
QVC82_RS01110GCF_019424595#QVC82_RS01110
RROmpR
11 263-11 928 nt · Reverse (-)
QVC82_RS01115GCF_019424595#QVC82_RS01115
RRCheY
12 265-12 606 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019424595#QVC82_RS01105The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1691455
Simplified PFAM architecture for HKOC_1691455
PFAM domain coverage: 163 / 473 aa (34.5%)
1 aa473 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[257-316] | HATPase_c[370-472]
- Domain count: 2
- Matched identifier: HKOC_1691455
- Positioned domains: HisKA 257-316 ; HATPase_c 370-472
Cluster members and taxonomy
Representative gene: GCF_019424595#QVC82_RS01105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 955 243 · GCF_019424595
AssemblyASM1942459v1 · Scaffoldhaploid
Genome composition4 058 680 bp · 41,0% GCBlautia sp.
Signal transduction countsGenes 128 · HK 65 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key