1 Response_reg#1
4-116 aa · 113 aa · 80.7% of protein
Raw token
Response_reg:4:2.3e-22:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVC82_RS00080
Response regulator, CheY family
Blautia sp. · GCF_019424595
ClassRRTypeCheYLength140 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019424595#QVC82_RS00080Stable P2CS identifier used across views.
GenomeGCF_019424595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length140 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 140 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa140 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.3e-22:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019424595::NZ_JAHYZD010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15084-17226Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019424595::NZ_JAHYZD010000001.1::G00001Context members
QVC82_RS00075QVC82_RS00080
Partner locus tags
QVC82_RS00075QVC82_RS00080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055153804.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TWL5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TWL5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVC82_RS00080Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAHYZD010000001.1Sequence record reported by the local genomic context database.
Genomic interval16 804-17 226 nt423 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 084-17 226 ntGCF_019424595::NZ_JAHYZD010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019424595::NZ_JAHYZD010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHYZD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span15 084-17 226 nt2 143 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 084 nt17 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVC82_RS00075GCF_019424595#QVC82_RS00075
HKClassic
15 084-16 811 nt · Forward (+)
QVC82_RS00080GCF_019424595#QVC82_RS00080
RRCheYCurrent focus
16 804-17 226 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS19915Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2266486
Simplified PFAM architecture for RROC_2266486
PFAM domain coverage: 103 / 140 aa (73.6%)
1 aa140 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-106]
- Domain count: 1
- Matched identifier: RROC_2266486
- Positioned domains: Response_reg 4-106 ; Response_reg 4-106
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS19915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 955 243 · GCF_019424595
AssemblyASM1942459v1 · Scaffoldhaploid
Genome composition4 058 680 bp · 41,0% GCBlautia sp.
Signal transduction countsGenes 128 · HK 65 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key