1 HAMP#1
207-276 aa · 70 aa · 12.5% of protein
Raw token
HAMP:207:0.0000000000000387:276:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY55_RS04975
Histidine kinase, Classic
Bifidobacterium sp. MSK.13.1 · GCF_019131435
ClassHKTypeClassicLength558 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131435#KSY55_RS04975Stable P2CS identifier used across views.
GenomeGCF_019131435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length558 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 558 aa (44.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa558 aa
Domain-by-domain annotation3 items
2 HisKA#2
287-354 aa · 68 aa · 12.2% of protein
Raw token
HisKA:287:0.00000000000000922:354:68:643 HATPase_c#3
401-511 aa · 111 aa · 19.9% of protein
Raw token
HATPase_c:401:1.24e-29:511:111:109- Raw architecture: HAMP:207:0.0000000000000387:276:70:69#HisKA:287:0.00000000000000922:354:68:64#HATPase_c:401:1.24e-29:511:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131435::NZ_JAHOMM010000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45683-48101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY55_04970RefSeq proteinWP_051662159.1
Context group ID
GCF_019131435::NZ_JAHOMM010000003.1::G00009Context members
KSY55_RS04975KSY55_RS04980
Partner locus tags
KSY55_RS04975KSY55_RS04980
Partner old locus tags
KSY55_04970KSY55_04975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051662159.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY55_RS04975Primary locus identifier stored in the genes table.
Old locus tagKSY55_04970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOMM010000003.1Sequence record reported by the local genomic context database.
Genomic interval45 683-47 359 nt1 677 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 683-48 101 ntGCF_019131435::NZ_JAHOMM010000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131435::NZ_JAHOMM010000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOMM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span45 683-48 101 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 683 nt48 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY55_RS04975GCF_019131435#KSY55_RS04975
HKClassicCurrent focus
45 683-47 359 nt · Reverse (-)
KSY55_RS04980GCF_019131435#KSY55_RS04980
RROmpR
47 367-48 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000940535#BPSEU7765_RS03465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1265070
Simplified PFAM architecture for HKOC_1265070
PFAM domain coverage: 229 / 558 aa (41.0%)
1 aa558 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[224-275] | HisKA[288-354] | HATPase_c[401-510]
- Domain count: 3
- Matched identifier: HKOC_1265070
- Positioned domains: HAMP 224-275 ; HisKA 288-354 ; HATPase_c 401-510
Cluster members and taxonomy
Representative gene: GCF_000940535#BPSEU7765_RS03465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 849 165 · GCF_019131435
AssemblyASM1913143v1 · Contighaploid
Genome composition2 210 796 bp · 56,5% GCBifidobacterium sp. MSK.13.1
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key