1 Response_reg#1
1-65 aa · 65 aa · 41.4% of protein
Raw token
Response_reg:1:0.00000000197:65:66:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY55_RS02430
Response regulator NarL family
Bifidobacterium sp. MSK.13.1 · GCF_019131435
ClassRRTypeNarLLength157 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019131435#KSY55_RS02430Stable P2CS identifier used across views.
GenomeGCF_019131435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length157 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage121 / 157 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa157 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
95-150 aa · 56 aa · 35.7% of protein
Raw token
HTH_LUXR:95:3.86e-18:150:56:58- Raw architecture: Response_reg:1:0.00000000197:65:66:111#HTH_LUXR:95:3.86e-18:150:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019131435::NZ_JAHOMM010000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span587253-587726Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY55_02425RefSeq proteinWP_303246369.1
Context group ID
GCF_019131435::NZ_JAHOMM010000001.1::G00006Context members
KSY55_RS02430
Partner locus tags
KSY55_RS02430
Partner old locus tags
KSY55_02425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_303246369.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY55_RS02430Primary locus identifier stored in the genes table.
Old locus tagKSY55_02425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOMM010000001.1Sequence record reported by the local genomic context database.
Genomic interval587 253-587 726 nt474 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span587 253-587 726 ntGCF_019131435::NZ_JAHOMM010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131435::NZ_JAHOMM010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOMM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span587 253-587 726 nt474 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
587 253 nt587 726 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSY55_RS02430GCF_019131435#KSY55_RS02430
RRNarLCurrent focus
587 253-587 726 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019131145#KSY53_RS02430Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2212930
Simplified PFAM architecture for RROC_2212930
PFAM domain coverage: 118 / 157 aa (75.2%)
1 aa157 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[1-64] | GerE[96-149]
- Domain count: 2
- Matched identifier: RROC_2212930
- Positioned domains: Response_reg 1-64 ; GerE 96-149
Cluster members and taxonomy
Representative gene: GCF_019131145#KSY53_RS02430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 849 165 · GCF_019131435
AssemblyASM1913143v1 · Contighaploid
Genome composition2 210 796 bp · 56,5% GCBifidobacterium sp. MSK.13.1
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key