1 HAMP#1
58-127 aa · 70 aa · 20.0% of protein
Raw token
HAMP:58:0.00000000123:127:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY47_RS03915
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019131015
ClassHKTypeClassicLength350 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131015#KSY47_RS03915Stable P2CS identifier used across views.
GenomeGCF_019131015Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 350 aa (69.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
132-195 aa · 64 aa · 18.3% of protein
Raw token
HisKA:132:0.00000000000339:195:64:643 HATPase_c#3
241-348 aa · 108 aa · 30.9% of protein
Raw token
HATPase_c:241:5.96e-26:348:109:109- Raw architecture: HAMP:58:0.00000000123:127:70:69#HisKA:132:0.00000000000339:195:64:64#HATPase_c:241:5.96e-26:348:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131015::NZ_JAHOLO010000005.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74237-75959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY47_03940RefSeq proteinWP_227141151.1
Context group ID
GCF_019131015::NZ_JAHOLO010000005.1::G00027Context members
KSY47_RS03915KSY47_RS03920
Partner locus tags
KSY47_RS03915KSY47_RS03920
Partner old locus tags
KSY47_03940KSY47_03945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227141151.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY47_RS03915Primary locus identifier stored in the genes table.
Old locus tagKSY47_03940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOLO010000005.1Sequence record reported by the local genomic context database.
Genomic interval74 237-75 289 nt1 053 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 237-75 959 ntGCF_019131015::NZ_JAHOLO010000005.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131015::NZ_JAHOLO010000005.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOLO010000005.1All displayed genes belong to this local TCS context.
Neighborhood span74 237-75 959 nt1 723 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 237 nt75 959 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY47_RS03915GCF_019131015#KSY47_RS03915
HKClassicCurrent focus
74 237-75 289 nt · Reverse (-)
KSY47_RS03920GCF_019131015#KSY47_RS03920
RROmpR
75 279-75 959 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS02470Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792554
Simplified PFAM architecture for HKOC_2792554
PFAM domain coverage: 174 / 351 aa (49.6%)
1 aa351 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-197] | HATPase_c[242-350]
- Domain count: 2
- Matched identifier: HKOC_2792554
- Positioned domains: HisKA 133-197 ; HATPase_c 242-350
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS02470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019131015
AssemblyASM1913101v1 · Contighaploid
Genome composition3 720 120 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 61 · HK 28 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key