1 HisKA#1
411-478 aa · 68 aa · 10.6% of protein
Raw token
HisKA:411:0.0000000000035:478:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY47_RS00240
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019131015
ClassHKTypeClassicLength639 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131015#KSY47_RS00240Stable P2CS identifier used across views.
GenomeGCF_019131015Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length639 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 639 aa (28.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
523-634 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:523:6.09e-27:634:112:109- Raw architecture: HisKA:411:0.0000000000035:478:68:64#HATPase_c:523:6.09e-27:634:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131015::NZ_JAHOLO010000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49484-52094Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY47_00240RefSeq proteinWP_009008946.1
Context group ID
GCF_019131015::NZ_JAHOLO010000001.1::G00012Context members
KSY47_RS00240KSY47_RS00245
Partner locus tags
KSY47_RS00240KSY47_RS00245
Partner old locus tags
KSY47_00240KSY47_00245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009008946.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY47_RS00240Primary locus identifier stored in the genes table.
Old locus tagKSY47_00240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOLO010000001.1Sequence record reported by the local genomic context database.
Genomic interval49 484-51 403 nt1 920 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 484-52 094 ntGCF_019131015::NZ_JAHOLO010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131015::NZ_JAHOLO010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOLO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span49 484-52 094 nt2 611 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 484 nt52 094 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY47_RS00240GCF_019131015#KSY47_RS00240
HKClassicCurrent focus
49 484-51 403 nt · Forward (+)
KSY47_RS00245GCF_019131015#KSY47_RS00245
RROmpR
51 396-52 094 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052555#KTQ95_RS02845Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0925025
Simplified PFAM architecture for HKOC_0925025
PFAM domain coverage: 285 / 639 aa (44.6%)
1 aa639 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[153-259] | HisKA[411-478] | HATPase_c[524-633]
- Domain count: 3
- Matched identifier: HKOC_0925025
- Positioned domains: DUF4118 153-259 ; HisKA 411-478 ; HATPase_c 524-633
Cluster members and taxonomy
Representative gene: GCF_019052555#KTQ95_RS02845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019131015
AssemblyASM1913101v1 · Contighaploid
Genome composition3 720 120 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 61 · HK 28 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key