1 Response_reg#1
12-97 aa · 86 aa · 41.1% of protein
Raw token
Response_reg:12:0.00000000000000152:97:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSW29_RS01340
Response regulator NarL family
Bifidobacterium adolescentis · GCF_019127685
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019127685#KSW29_RS01340Stable P2CS identifier used across views.
GenomeGCF_019127685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 209 aa (67.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-202 aa · 56 aa · 26.8% of protein
Raw token
HTH_LUXR:147:0.00000000000000149:202:56:58- Raw architecture: Response_reg:12:0.00000000000000152:97:86:111#HTH_LUXR:147:0.00000000000000149:202:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019127685::NZ_JAHOEZ010000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span305276-305905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSW29_01340RefSeq proteinWP_003807685.1
Context group ID
GCF_019127685::NZ_JAHOEZ010000001.1::G00005Context members
KSW29_RS01340
Partner locus tags
KSW29_RS01340
Partner old locus tags
KSW29_01340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003807685.1Primary protein accession used for annex mappings.
UniProt accessionA0A087DLJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A087DLJ6_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSW29_RS01340Primary locus identifier stored in the genes table.
Old locus tagKSW29_01340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOEZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval305 276-305 905 nt630 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span305 276-305 905 ntGCF_019127685::NZ_JAHOEZ010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019127685::NZ_JAHOEZ010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOEZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span305 276-305 905 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 276 nt305 905 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSW29_RS01340GCF_019127685#KSW29_RS01340
RRNarLCurrent focus
305 276-305 905 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108015#B0487_RS01315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1596230
Simplified PFAM architecture for RROC_1596230
PFAM domain coverage: 145 / 223 aa (65.0%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[26-115] | GerE[162-216]
- Domain count: 2
- Matched identifier: RROC_1596230
- Positioned domains: Response_reg 26-115 ; Response_reg 26-115 ; GerE 162-216 ; GerE 162-216
Cluster members and taxonomy
Representative gene: GCF_002108015#B0487_RS01315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_019127685
AssemblyASM1912768v1 · Contighaploid
Genome composition2 227 675 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key