1 Response_reg#1
16-130 aa · 115 aa · 52.0% of protein
Raw token
Response_reg:16:9.69e-19:130:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSW29_RS02275
Response regulator NarL family
Bifidobacterium adolescentis · GCF_019127685
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019127685#KSW29_RS02275Stable P2CS identifier used across views.
GenomeGCF_019127685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 221 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-214 aa · 56 aa · 25.3% of protein
Raw token
HTH_LUXR:159:7.2e-18:214:56:58- Raw architecture: Response_reg:16:9.69e-19:130:116:111#HTH_LUXR:159:7.2e-18:214:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019127685::NZ_JAHOEZ010000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span546701-547366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSW29_02275RefSeq proteinWP_021913493.1
Context group ID
GCF_019127685::NZ_JAHOEZ010000001.1::G00006Context members
KSW29_RS02275
Partner locus tags
KSW29_RS02275
Partner old locus tags
KSW29_02275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021913493.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E7Y2U3Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E7Y2U3_BIFADDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSW29_RS02275Primary locus identifier stored in the genes table.
Old locus tagKSW29_02275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOEZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval546 701-547 366 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span546 701-547 366 ntGCF_019127685::NZ_JAHOEZ010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019127685::NZ_JAHOEZ010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOEZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span546 701-547 366 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
546 701 nt547 366 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSW29_RS02275GCF_019127685#KSW29_RS02275
RRNarLCurrent focus
546 701-547 366 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019127835#KSW26_RS02285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1495249
Simplified PFAM architecture for RROC_1495249
PFAM domain coverage: 167 / 225 aa (74.2%)
1 aa225 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[20-133] | GerE[165-217]
- Domain count: 2
- Matched identifier: RROC_1495249
- Positioned domains: Response_reg 20-133 ; GerE 165-217
Cluster members and taxonomy
Representative gene: GCF_019127835#KSW26_RS02285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_019127685
AssemblyASM1912768v1 · Contighaploid
Genome composition2 227 675 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key