1 Response_reg#1
7-114 aa · 108 aa · 49.8% of protein
Raw token
Response_reg:7:1.53e-26:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU47_RS00285
Response regulator OmpR family
Thomasclavelia ramosa · GCF_019125565
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019125565#KSU47_RS00285Stable P2CS identifier used across views.
GenomeGCF_019125565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 217 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 33.2% of protein
Raw token
Trans_reg_C:145:8.59e-25:216:77:77- Raw architecture: Response_reg:7:1.53e-26:114:109:111#Trans_reg_C:145:8.59e-25:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019125565::NZ_JAHOBC010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45649-47639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU47_00285RefSeq proteinWP_003536901.1
Context group ID
GCF_019125565::NZ_JAHOBC010000001.1::G00011Context members
KSU47_RS00285KSU47_RS00290
Partner locus tags
KSU47_RS00285KSU47_RS00290
Partner old locus tags
KSU47_00285KSU47_00290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536901.1Primary protein accession used for annex mappings.
UniProt accessionB0N4D4Primary UniProt accession resolved in the annex database.
UniProt IDB0N4D4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU47_RS00285Primary locus identifier stored in the genes table.
Old locus tagKSU47_00285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBC010000001.1Sequence record reported by the local genomic context database.
Genomic interval45 649-46 302 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 649-47 639 ntGCF_019125565::NZ_JAHOBC010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125565::NZ_JAHOBC010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span45 649-47 639 nt1 991 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 649 nt47 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSU47_RS00285GCF_019125565#KSU47_RS00285
RROmpRCurrent focus
45 649-46 302 nt · Forward (+)
KSU47_RS00290GCF_019125565#KSU47_RS00290
HKClassic
46 302-47 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS07185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847664
Simplified PFAM architecture for RROC_1847664
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1847664
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS07185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125565
AssemblyASM1912556v1 · Contighaploid
Genome composition3 713 909 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key