1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000391:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU89_RS02890
Histidine kinase, Classic
Bifidobacterium longum · GCF_019125315
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019125315#KSU89_RS02890Stable P2CS identifier used across views.
GenomeGCF_019125315Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000324:392:86:109- Raw architecture: HisKA_3:201:0.0000000391:265:65:68#HATPase_c:322:0.0000324:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019125315::NZ_JAHOAU010000003.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124122-126114Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU89_02900RefSeq proteinWP_217736389.1
Context group ID
GCF_019125315::NZ_JAHOAU010000003.1::G00007Context members
KSU89_RS02885KSU89_RS02890
Partner locus tags
KSU89_RS02885KSU89_RS02890
Partner old locus tags
KSU89_02895KSU89_02900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217736389.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU89_RS02890Primary locus identifier stored in the genes table.
Old locus tagKSU89_02900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOAU010000003.1Sequence record reported by the local genomic context database.
Genomic interval124 882-126 114 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span124 122-126 114 ntGCF_019125315::NZ_JAHOAU010000003.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125315::NZ_JAHOAU010000003.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOAU010000003.1All displayed genes belong to this local TCS context.
Neighborhood span124 122-126 114 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 122 nt126 114 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSU89_RS02885GCF_019125315#KSU89_RS02885
RRNarL
124 122-124 847 nt · Reverse (-)
KSU89_RS02890GCF_019125315#KSU89_RS02890
HKClassicCurrent focus
124 882-126 114 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019125315#KSU89_RS02890The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2357344
Simplified PFAM architecture for HKOC_2357344
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2357344
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_019125315#KSU89_RS02890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_019125315
AssemblyASM1912531v1 · Contighaploid
Genome composition2 611 443 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key