1 HAMP#1
39-111 aa · 73 aa · 21.2% of protein
Raw token
HAMP:39:0.0000657:111:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTT80_RS12670
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_019061315
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019061315#KTT80_RS12670Stable P2CS identifier used across views.
GenomeGCF_019061315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 345 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-188 aa · 62 aa · 18.0% of protein
Raw token
HisKA:127:0.0000000000027:188:62:643 HATPase_c#3
234-343 aa · 110 aa · 31.9% of protein
Raw token
HATPase_c:234:3.96e-33:343:110:109- Raw architecture: HAMP:39:0.0000657:111:73:69#HisKA:127:0.0000000000027:188:62:64#HATPase_c:234:3.96e-33:343:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019061315::NZ_JAHQYV010000027.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27256-28983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTT80_12665RefSeq proteinWP_217285541.1
Context group ID
GCF_019061315::NZ_JAHQYV010000027.1::G00018Context members
KTT80_RS12670KTT80_RS12675
Partner locus tags
KTT80_RS12670KTT80_RS12675
Partner old locus tags
KTT80_12665KTT80_12670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217285541.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTT80_RS12670Primary locus identifier stored in the genes table.
Old locus tagKTT80_12665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHQYV010000027.1Sequence record reported by the local genomic context database.
Genomic interval27 256-28 293 nt1 038 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 256-28 983 ntGCF_019061315::NZ_JAHQYV010000027.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019061315::NZ_JAHQYV010000027.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHQYV010000027.1All displayed genes belong to this local TCS context.
Neighborhood span27 256-28 983 nt1 728 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 256 nt28 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KTT80_RS12670GCF_019061315#KTT80_RS12670
HKClassicCurrent focus
27 256-28 293 nt · Reverse (-)
KTT80_RS12675GCF_019061315#KTT80_RS12675
RROmpR
28 303-28 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019061315#KTT80_RS12670The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2820893
Simplified PFAM architecture for HKOC_2820893
PFAM domain coverage: 173 / 345 aa (50.1%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-188] | HATPase_c[234-342]
- Domain count: 2
- Matched identifier: HKOC_2820893
- Positioned domains: HisKA 125-188 ; HATPase_c 234-342
Cluster members and taxonomy
Representative gene: GCF_019061315#KTT80_RS12670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_019061315
AssemblyASM1906131v1 · Contighaploid
Genome composition2 917 543 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key