1 Response_reg#1
5-105 aa · 101 aa · 19.1% of protein
Raw token
Response_reg:5:2.77e-30:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK81_RS04765
Response regulator, unclassified
Blautia sp. MCC283 · GCF_018785565
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018785565#GPK81_RS04765Stable P2CS identifier used across views.
GenomeGCF_018785565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 528 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
432-473 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:432:0.00000141:473:42:423 HTH_AraC#3
487-523 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:487:0.000000000226:523:37:42- Raw architecture: Response_reg:5:2.77e-30:105:101:111#HTH_AraC:432:0.00000141:473:42:42#HTH_AraC:487:0.000000000226:523:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018785565::NZ_WQQB01000015.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109092-112417Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK81_04795RefSeq proteinWP_021976602.1
Context group ID
GCF_018785565::NZ_WQQB01000015.1::G00016Context members
GPK81_RS04765GPK81_RS04770
Partner locus tags
GPK81_RS04765GPK81_RS04770
Partner old locus tags
GPK81_04795GPK81_04800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021976602.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK81_RS04765Primary locus identifier stored in the genes table.
Old locus tagGPK81_04795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQQB01000015.1Sequence record reported by the local genomic context database.
Genomic interval109 092-110 678 nt1 587 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span109 092-112 417 ntGCF_018785565::NZ_WQQB01000015.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018785565::NZ_WQQB01000015.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQQB01000015.1All displayed genes belong to this local TCS context.
Neighborhood span109 092-112 417 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 092 nt112 417 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK81_RS04765GCF_018785565#GPK81_RS04765
RRunclassifiedCurrent focus
109 092-110 678 nt · Reverse (-)
GPK81_RS04770GCF_018785565#GPK81_RS04770
HKClassic
110 678-112 417 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018785565#GPK81_RS04765The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0115116
Simplified PFAM architecture for RROC_0115116
PFAM domain coverage: 189 / 528 aa (35.8%)
1 aa528 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[446-523]
- Domain count: 2
- Matched identifier: RROC_0115116
- Positioned domains: Response_reg 5-115 ; HTH_18 446-523
Cluster members and taxonomy
Representative gene: GCF_018785565#GPK81_RS04765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 592 640 · GCF_018785565
AssemblyASM1878556v1 · Scaffoldhaploid
Genome composition3 812 449 bp · 44,0% GCBlautia sp. MCC283
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key