1 HisKA_3#1
191-251 aa · 61 aa · 16.1% of protein
Raw token
HisKA_3:191:0.0000000000000309:251:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS00945
Histidine kinase, Classic
Agathobacter rectalis · GCF_018784725
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784725#GPK75_RS00945Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 380 aa (37.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
295-377 aa · 83 aa · 21.8% of protein
Raw token
HATPase_c:295:0.00000000014:377:97:109- Raw architecture: HisKA_3:191:0.0000000000000309:251:63:68#HATPase_c:295:0.00000000014:377:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784725::NZ_WQOP01000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span204098-205948Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_00920RefSeq proteinWP_306778480.1
Context group ID
GCF_018784725::NZ_WQOP01000001.1::G00020Context members
GPK75_RS00945GPK75_RS00950
Partner locus tags
GPK75_RS00945GPK75_RS00950
Partner old locus tags
GPK75_00920GPK75_00925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306778480.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS00945Primary locus identifier stored in the genes table.
Old locus tagGPK75_00920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000001.1Sequence record reported by the local genomic context database.
Genomic interval204 098-205 240 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span204 098-205 948 ntGCF_018784725::NZ_WQOP01000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span204 098-205 948 nt1 851 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
204 098 nt205 948 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK75_RS00945GCF_018784725#GPK75_RS00945
HKClassicCurrent focus
204 098-205 240 nt · Forward (+)
GPK75_RS00950GCF_018784725#GPK75_RS00950
RRNarL
205 292-205 948 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS00945The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2614122
Simplified PFAM architecture for HKOC_2614122
PFAM domain coverage: 145 / 380 aa (38.2%)
1 aa380 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[191-252] | HATPase_c[295-377]
- Domain count: 2
- Matched identifier: HKOC_2614122
- Positioned domains: HisKA_3 191-252 ; HATPase_c 295-377
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS00945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key