1 Response_reg#1
3-112 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:3:5.04e-16:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS04760
Response regulator LytTR family
Fusicatenibacter saccharivorans · GCF_018784465
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784465#GPK70_RS04760Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 238 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:0.0000000000000156:230:97:98- Raw architecture: Response_reg:3:5.04e-16:112:112:111#LytTR:139:0.0000000000000156:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784465::NZ_WQOI01000036.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30738-31454Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_04735RefSeq proteinWP_055264998.1
Context group ID
GCF_018784465::NZ_WQOI01000036.1::G00025Context members
GPK70_RS04760
Partner locus tags
GPK70_RS04760
Partner old locus tags
GPK70_04735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055264998.1Primary protein accession used for annex mappings.
UniProt accessionA0A174H1V7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174H1V7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS04760Primary locus identifier stored in the genes table.
Old locus tagGPK70_04735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000036.1Sequence record reported by the local genomic context database.
Genomic interval30 738-31 454 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 738-31 454 ntGCF_018784465::NZ_WQOI01000036.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000036.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000036.1All displayed genes belong to this local TCS context.
Neighborhood span30 738-31 454 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 738 nt31 454 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK70_RS04760GCF_018784465#GPK70_RS04760
RRLytTRCurrent focus
30 738-31 454 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS01180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936240
Simplified PFAM architecture for RROC_0936240
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0936240
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS01180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key