1 HAMP#1
64-132 aa · 69 aa · 18.3% of protein
Raw token
HAMP:64:0.00000000000162:132:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS03580
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784465#GPK70_RS03580Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 377 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation3 items
2 HisKA#2
144-209 aa · 66 aa · 17.5% of protein
Raw token
HisKA:144:0.00000000000141:209:66:643 HATPase_c#3
256-365 aa · 110 aa · 29.2% of protein
Raw token
HATPase_c:256:1.66e-28:365:111:109- Raw architecture: HAMP:64:0.00000000000162:132:69:69#HisKA:144:0.00000000000141:209:66:64#HATPase_c:256:1.66e-28:365:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784465::NZ_WQOI01000029.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6984-8805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_03545RefSeq proteinWP_215663002.1
Context group ID
GCF_018784465::NZ_WQOI01000029.1::G00023Context members
GPK70_RS03580GPK70_RS03585
Partner locus tags
GPK70_RS03580GPK70_RS03585
Partner old locus tags
GPK70_03545GPK70_03550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215663002.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS03580Primary locus identifier stored in the genes table.
Old locus tagGPK70_03545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000029.1Sequence record reported by the local genomic context database.
Genomic interval6 984-8 117 nt1 134 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 984-8 805 ntGCF_018784465::NZ_WQOI01000029.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000029.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000029.1All displayed genes belong to this local TCS context.
Neighborhood span6 984-8 805 nt1 822 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 984 nt8 805 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK70_RS03580GCF_018784465#GPK70_RS03580
HKClassicCurrent focus
6 984-8 117 nt · Reverse (-)
GPK70_RS03585GCF_018784465#GPK70_RS03585
RROmpR
8 107-8 805 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784465#GPK70_RS03580The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2637469
Simplified PFAM architecture for HKOC_2637469
PFAM domain coverage: 227 / 377 aa (60.2%)
1 aa377 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[80-131] | HisKA[144-209] | HATPase_c[257-365]
- Domain count: 3
- Matched identifier: HKOC_2637469
- Positioned domains: HAMP 80-131 ; HisKA 144-209 ; HATPase_c 257-365
Cluster members and taxonomy
Representative gene: GCF_018784465#GPK70_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key