1 Response_reg#1
7-119 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:7:5.61e-28:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5V93_RS01225
Response regulator, unclassified
Bacillus mycoides · GCF_018742185
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018742185#J5V93_RS01225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 230 aa (49.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:5.61e-28:119:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018742185::NZ_CP072061.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span262298-262990Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5V93_01225RefSeq proteinWP_215563920.1
Context group ID
GCF_018742185::NZ_CP072061.1::G00004Context members
J5V93_RS01225
Partner locus tags
J5V93_RS01225
Partner old locus tags
J5V93_01225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215563920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5V93_RS01225Primary locus identifier stored in the genes table.
Old locus tagJ5V93_01225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072061.1Sequence record reported by the local genomic context database.
Genomic interval262 298-262 990 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span262 298-262 990 ntGCF_018742185::NZ_CP072061.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742185::NZ_CP072061.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072061.1All displayed genes belong to this local TCS context.
Neighborhood span262 298-262 990 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
262 298 nt262 990 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
J5V93_RS01225GCF_018742185#J5V93_RS01225
RRunclassifiedCurrent focus
262 298-262 990 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741145#EXW44_RS01250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1221568
Simplified PFAM architecture for RROC_1221568
PFAM domain coverage: 161 / 230 aa (70.0%)
1 aa230 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-118] | HTH_64[178-226]
- Domain count: 2
- Matched identifier: RROC_1221568
- Positioned domains: Response_reg 7-118 ; HTH_64 178-226
Cluster members and taxonomy
Representative gene: GCF_018741145#EXW44_RS01250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742185
AssemblyASM1874218v1 · Complete Genomehaploid
Genome composition5 938 126 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 70 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key