1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:5.12e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J5V93_RS00030
Response regulator OmpR family
Bacillus mycoides · GCF_018742185
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742185#J5V93_RS00030Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:154:1.05e-35:230:77:77- Raw architecture: Response_reg:6:5.12e-36:115:111:111#Trans_reg_C:154:1.05e-35:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742185::NZ_CP072061.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3702-5418Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ5V93_00030RefSeq proteinWP_002170136.1
Context group ID
GCF_018742185::NZ_CP072061.1::G00001Context members
J5V93_RS00025J5V93_RS00030
Partner locus tags
J5V93_RS00025J5V93_RS00030
Partner old locus tags
J5V93_00025J5V93_00030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002170136.1Primary protein accession used for annex mappings.
UniProt accessionR8NM07Primary UniProt accession resolved in the annex database.
UniProt IDR8NM07_BACCXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ5V93_RS00030Primary locus identifier stored in the genes table.
Old locus tagJ5V93_00030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP072061.1Sequence record reported by the local genomic context database.
Genomic interval4 705-5 418 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 702-5 418 ntGCF_018742185::NZ_CP072061.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742185::NZ_CP072061.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP072061.1All displayed genes belong to this local TCS context.
Neighborhood span3 702-5 418 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 702 nt5 418 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J5V93_RS00025GCF_018742185#J5V93_RS00025
HKClassic
3 702-4 715 nt · Reverse (-)
J5V93_RS00030GCF_018742185#J5V93_RS00030
RROmpRCurrent focus
4 705-5 418 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS01375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961333
Simplified PFAM architecture for RROC_0961333
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0961333
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS01375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742185
AssemblyASM1874218v1 · Complete Genomehaploid
Genome composition5 938 126 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 70 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key