1 HAMP#1
55-122 aa · 68 aa · 20.4% of protein
Raw token
HAMP:55:0.00000134:122:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW43_RS15590
Histidine kinase, Classic
Bacillus mycoides · GCF_018741645
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741645#EXW43_RS15590Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 333 aa (61.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.2% of protein
Raw token
HisKA:137:0.00000000674:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.6% of protein
Raw token
HATPase_c:246:0.0000000129:327:103:109- Raw architecture: HAMP:55:0.00000134:122:71:69#HisKA:137:0.00000000674:190:54:64#HATPase_c:246:0.0000000129:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741645::NZ_CP036117.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2962409-2964078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW43_15955RefSeq proteinWP_215575874.1
Context group ID
GCF_018741645::NZ_CP036117.1::G00043Context members
EXW43_RS15590EXW43_RS15595
Partner locus tags
EXW43_RS15590EXW43_RS15595
Partner old locus tags
EXW43_15955EXW43_15960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215575874.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW43_RS15590Primary locus identifier stored in the genes table.
Old locus tagEXW43_15955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036117.1Sequence record reported by the local genomic context database.
Genomic interval2 962 409-2 963 410 nt1 002 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 962 409-2 964 078 ntGCF_018741645::NZ_CP036117.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741645::NZ_CP036117.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036117.1All displayed genes belong to this local TCS context.
Neighborhood span2 962 409-2 964 078 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 962 409 nt2 964 078 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW43_RS15590GCF_018741645#EXW43_RS15590
HKClassicCurrent focus
2 962 409-2 963 410 nt · Reverse (-)
EXW43_RS15595GCF_018741645#EXW43_RS15595
RROmpR
2 963 407-2 964 078 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741645#EXW43_RS15590The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2852451
Simplified PFAM architecture for HKOC_2852451
PFAM domain coverage: 54 / 333 aa (16.2%)
1 aa333 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[137-190]
- Domain count: 1
- Matched identifier: HKOC_2852451
- Positioned domains: HisKA 137-190
Cluster members and taxonomy
Representative gene: GCF_018741645#EXW43_RS15590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741645
AssemblyASM1874164v1 · Complete Genomehaploid
Genome composition6 014 015 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 69 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key