1 HAMP#1
166-234 aa · 69 aa · 14.8% of protein
Raw token
HAMP:166:0.00000000000000194:234:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW46_RS27510
Histidine kinase, Classic
Bacillus mycoides · GCF_018741505
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018741505#EXW46_RS27510Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 467 aa (53.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.3% of protein
Raw token
HisKA:238:0.0000000000000272:304:67:643 HATPase_c#3
348-460 aa · 113 aa · 24.2% of protein
Raw token
HATPase_c:348:3.94e-33:460:114:109- Raw architecture: HAMP:166:0.00000000000000194:234:69:69#HisKA:238:0.0000000000000272:304:67:64#HATPase_c:348:3.94e-33:460:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018741505::NZ_CP036086.1::G00080
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span143269-144672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW46_28165RefSeq proteinWP_088099293.1
Context group ID
GCF_018741505::NZ_CP036086.1::G00080Context members
EXW46_RS27510
Partner locus tags
EXW46_RS27510
Partner old locus tags
EXW46_28165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088099293.1Primary protein accession used for annex mappings.
UniProt accessionA0A1G4EJ54Primary UniProt accession resolved in the annex database.
UniProt IDA0A1G4EJ54_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW46_RS27510Primary locus identifier stored in the genes table.
Old locus tagEXW46_28165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036086.1Sequence record reported by the local genomic context database.
Genomic interval143 269-144 672 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 269-144 672 ntGCF_018741505::NZ_CP036086.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741505::NZ_CP036086.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036086.1All displayed genes belong to this local TCS context.
Neighborhood span143 269-144 672 nt1 404 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 269 nt144 672 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EXW46_RS27510GCF_018741505#EXW46_RS27510
HKClassicCurrent focus
143 269-144 672 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741505#EXW46_RS27510The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1754375
Simplified PFAM architecture for HKOC_1754375
PFAM domain coverage: 229 / 467 aa (49.0%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-233] | HisKA[238-304] | HATPase_c[348-459]
- Domain count: 3
- Matched identifier: HKOC_1754375
- Positioned domains: HAMP 184-233 ; HisKA 238-304 ; HATPase_c 348-459
Cluster members and taxonomy
Representative gene: GCF_018741505#EXW46_RS27510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741505
AssemblyASM1874150v1 · Complete Genomehaploid
Genome composition5 490 614 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 75 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key