1 HisKA#1
257-323 aa · 67 aa · 14.0% of protein
Raw token
HisKA:257:0.00000000208:323:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW39_RS24995
Histidine kinase, Classic
Bacillus mycoides · GCF_018741165
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018741165#EXW39_RS24995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 479 aa (37.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
368-478 aa · 111 aa · 23.2% of protein
Raw token
HATPase_c:368:4.48e-21:478:112:109- Raw architecture: HisKA:257:0.00000000208:323:67:64#HATPase_c:368:4.48e-21:478:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018741165::NZ_CP036064.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4899238-4901320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW39_25485RefSeq proteinWP_215590359.1
Context group ID
GCF_018741165::NZ_CP036064.1::G00064Context members
EXW39_RS24990EXW39_RS24995
Partner locus tags
EXW39_RS24990EXW39_RS24995
Partner old locus tags
EXW39_25480EXW39_25485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215590359.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW39_RS24995Primary locus identifier stored in the genes table.
Old locus tagEXW39_25485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036064.1Sequence record reported by the local genomic context database.
Genomic interval4 899 881-4 901 320 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 899 238-4 901 320 ntGCF_018741165::NZ_CP036064.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018741165::NZ_CP036064.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036064.1All displayed genes belong to this local TCS context.
Neighborhood span4 899 238-4 901 320 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 899 238 nt4 901 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW39_RS24990GCF_018741165#EXW39_RS24990
RROmpR
4 899 238-4 899 903 nt · Forward (+)
EXW39_RS24995GCF_018741165#EXW39_RS24995
HKClassicCurrent focus
4 899 881-4 901 320 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741165#EXW39_RS24995The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1632156
Simplified PFAM architecture for HKOC_1632156
PFAM domain coverage: 174 / 479 aa (36.3%)
1 aa479 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[258-322] | HATPase_c[369-477]
- Domain count: 2
- Matched identifier: HKOC_1632156
- Positioned domains: HisKA 258-322 ; HATPase_c 369-477
Cluster members and taxonomy
Representative gene: GCF_018741165#EXW39_RS24995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018741165
AssemblyASM1874116v1 · Complete Genomehaploid
Genome composition5 865 739 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 67 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key