1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.00000000000239:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW60_RS19725
Histidine kinase, Classic
Bacillus mycoides · GCF_018739385
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018739385#EXW60_RS19725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 355 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.0000000000123:191:62:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:2.33e-21:350:110:109- Raw architecture: HAMP:50:0.00000000000239:119:70:69#HisKA:130:0.0000000000123:191:62:64#HATPase_c:242:2.33e-21:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018739385::NZ_CP035987.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3837090-3838845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW60_20075RefSeq proteinWP_215587630.1
Context group ID
GCF_018739385::NZ_CP035987.1::G00050Context members
EXW60_RS19720EXW60_RS19725
Partner locus tags
EXW60_RS19720EXW60_RS19725
Partner old locus tags
EXW60_20070EXW60_20075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215587630.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW60_RS19725Primary locus identifier stored in the genes table.
Old locus tagEXW60_20075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP035987.1Sequence record reported by the local genomic context database.
Genomic interval3 837 778-3 838 845 nt1 068 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 837 090-3 838 845 ntGCF_018739385::NZ_CP035987.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018739385::NZ_CP035987.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP035987.1All displayed genes belong to this local TCS context.
Neighborhood span3 837 090-3 838 845 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 837 090 nt3 838 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW60_RS19720GCF_018739385#EXW60_RS19720
RROmpR
3 837 090-3 837 788 nt · Forward (+)
EXW60_RS19725GCF_018739385#EXW60_RS19725
HKClassicCurrent focus
3 837 778-3 838 845 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018739385#EXW60_RS19725The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2777068
Simplified PFAM architecture for HKOC_2777068
PFAM domain coverage: 221 / 355 aa (62.3%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-192] | HATPase_c[247-351]
- Domain count: 3
- Matched identifier: HKOC_2777068
- Positioned domains: HAMP 67-119 ; HisKA 130-192 ; HATPase_c 247-351
Cluster members and taxonomy
Representative gene: GCF_018739385#EXW60_RS19725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018739385
AssemblyASM1873938v1 · Complete Genomehaploid
Genome composition5 728 462 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 62 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key