1 Response_reg#1
4-108 aa · 105 aa · 44.7% of protein
Raw token
Response_reg:4:9.83e-17:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS11050
Response regulator LytTR family
Bifidobacterium sp. SO4 · GCF_018555355
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018555355#JS536_RS11050Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 235 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.7% of protein
Raw token
LytTR:137:0.0000000000000243:227:104:98- Raw architecture: Response_reg:4:9.83e-17:108:108:111#LytTR:137:0.0000000000000243:227:104:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018555355::NZ_JAFEJP010000021.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34963-35670Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_11045RefSeq proteinWP_214356960.1
Context group ID
GCF_018555355::NZ_JAFEJP010000021.1::G00015Context members
JS536_RS11050
Partner locus tags
JS536_RS11050
Partner old locus tags
JS536_11045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_214356960.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS11050Primary locus identifier stored in the genes table.
Old locus tagJS536_11045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000021.1Sequence record reported by the local genomic context database.
Genomic interval34 963-35 670 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 963-35 670 ntGCF_018555355::NZ_JAFEJP010000021.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000021.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000021.1All displayed genes belong to this local TCS context.
Neighborhood span34 963-35 670 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 963 nt35 670 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JS536_RS11050GCF_018555355#JS536_RS11050
RRLytTRCurrent focus
34 963-35 670 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS11050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1031061
Simplified PFAM architecture for RROC_1031061
PFAM domain coverage: 198 / 235 aa (84.3%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[139-227]
- Domain count: 2
- Matched identifier: RROC_1031061
- Positioned domains: Response_reg 4-112 ; LytTR 139-227
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS11050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key