1 Response_reg#1
4-116 aa · 113 aa · 46.9% of protein
Raw token
Response_reg:4:1.71e-17:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS01450
Response regulator LytTR family
Bifidobacterium sp. SO4 · GCF_018555355
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018555355#JS536_RS01450Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 241 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-235 aa · 82 aa · 34.0% of protein
Raw token
LytTR:154:0.00000000000000128:235:88:98- Raw architecture: Response_reg:4:1.71e-17:116:116:111#LytTR:154:0.00000000000000128:235:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018555355::NZ_JAFEJP010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span365992-366717Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_01445RefSeq proteinWP_214355488.1
Context group ID
GCF_018555355::NZ_JAFEJP010000001.1::G00001Context members
JS536_RS01450
Partner locus tags
JS536_RS01450
Partner old locus tags
JS536_01445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_214355488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS01450Primary locus identifier stored in the genes table.
Old locus tagJS536_01445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000001.1Sequence record reported by the local genomic context database.
Genomic interval365 992-366 717 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span365 992-366 717 ntGCF_018555355::NZ_JAFEJP010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span365 992-366 717 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
365 992 nt366 717 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JS536_RS01450GCF_018555355#JS536_RS01450
RRLytTRCurrent focus
365 992-366 717 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS01450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0872083
Simplified PFAM architecture for RROC_0872083
PFAM domain coverage: 164 / 241 aa (68.0%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[39-116] | LytTR[150-235]
- Domain count: 2
- Matched identifier: RROC_0872083
- Positioned domains: Response_reg 39-116 ; LytTR 150-235
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS01450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key