1 Response_reg#1
5-116 aa · 112 aa · 51.1% of protein
Raw token
Response_reg:5:1.93e-28:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS10610
Response regulator NarL family
Bifidobacterium sp. SO4 · GCF_018555355
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018555355#JS536_RS10610Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 219 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
154-210 aa · 57 aa · 26.0% of protein
Raw token
HTH_LUXR:154:0.000000000000058:210:58:58- Raw architecture: Response_reg:5:1.93e-28:116:112:111#HTH_LUXR:154:0.000000000000058:210:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018555355::NZ_JAFEJP010000019.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13465-15508Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_10605RefSeq proteinWP_346427481.1
Context group ID
GCF_018555355::NZ_JAFEJP010000019.1::G00008Context members
JS536_RS10605JS536_RS10610
Partner locus tags
JS536_RS10605JS536_RS10610
Partner old locus tags
JS536_10600JS536_10605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_346427481.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS10610Primary locus identifier stored in the genes table.
Old locus tagJS536_10605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000019.1Sequence record reported by the local genomic context database.
Genomic interval14 849-15 508 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 465-15 508 ntGCF_018555355::NZ_JAFEJP010000019.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000019.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000019.1All displayed genes belong to this local TCS context.
Neighborhood span13 465-15 508 nt2 044 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 465 nt15 508 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JS536_RS10605GCF_018555355#JS536_RS10605
HKClassic
13 465-14 685 nt · Forward (+)
JS536_RS10610GCF_018555355#JS536_RS10610
RRNarLCurrent focus
14 849-15 508 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS10610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1786412
Simplified PFAM architecture for RROC_1786412
PFAM domain coverage: 162 / 219 aa (74.0%)
1 aa219 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[3-116] | Sigma70_r4_2[148-195]
- Domain count: 2
- Matched identifier: RROC_1786412
- Positioned domains: Response_reg 3-116 ; Sigma70_r4_2 148-195
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS10610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key