1 HAMP#1
56-126 aa · 71 aa · 19.9% of protein
Raw token
HAMP:56:1.29e-17:126:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS07820
Histidine kinase, Classic
Bifidobacterium sp. SO4 · GCF_018555355
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018555355#JS536_RS07820Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 356 aa (69.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-194 aa · 65 aa · 18.3% of protein
Raw token
HisKA:130:0.00000000000000106:194:65:643 HATPase_c#3
239-349 aa · 111 aa · 31.2% of protein
Raw token
HATPase_c:239:2.21e-21:349:113:109- Raw architecture: HAMP:56:1.29e-17:126:71:69#HisKA:130:0.00000000000000106:194:65:64#HATPase_c:239:2.21e-21:349:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018555355::NZ_JAFEJP010000010.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83981-85882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_07815RefSeq proteinWP_214356473.1
Context group ID
GCF_018555355::NZ_JAFEJP010000010.1::G00003Context members
JS536_RS07815JS536_RS07820
Partner locus tags
JS536_RS07815JS536_RS07820
Partner old locus tags
JS536_07810JS536_07815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_214356473.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS07820Primary locus identifier stored in the genes table.
Old locus tagJS536_07815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000010.1Sequence record reported by the local genomic context database.
Genomic interval84 812-85 882 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 981-85 882 ntGCF_018555355::NZ_JAFEJP010000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000010.1All displayed genes belong to this local TCS context.
Neighborhood span83 981-85 882 nt1 902 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 981 nt85 882 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JS536_RS07815GCF_018555355#JS536_RS07815
RROmpR
83 981-84 703 nt · Forward (+)
JS536_RS07820GCF_018555355#JS536_RS07820
HKClassicCurrent focus
84 812-85 882 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS07820The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2772570
Simplified PFAM architecture for HKOC_2772570
PFAM domain coverage: 229 / 356 aa (64.3%)
1 aa356 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-125] | HisKA[131-194] | HATPase_c[239-350]
- Domain count: 3
- Matched identifier: HKOC_2772570
- Positioned domains: HAMP 73-125 ; HisKA 131-194 ; HATPase_c 239-350
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS07820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key