1 Response_reg#1
47-153 aa · 107 aa · 40.8% of protein
Raw token
Response_reg:47:4.78e-29:153:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS07740
Response regulator, AmiR_NasR family
Bifidobacterium sp. SO4 · GCF_018555355
ClassRRTypeAmiR_NasRLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018555355#JS536_RS07740Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 262 aa (59.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 ANTAR#2
200-248 aa · 49 aa · 18.7% of protein
Raw token
ANTAR:200:2.45e-16:248:49:49- Raw architecture: Response_reg:47:4.78e-29:153:108:111#ANTAR:200:2.45e-16:248:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018555355::NZ_JAFEJP010000010.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span66773-67561Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_07735RefSeq proteinWP_109058138.1
Context group ID
GCF_018555355::NZ_JAFEJP010000010.1::G00002Context members
JS536_RS07740
Partner locus tags
JS536_RS07740
Partner old locus tags
JS536_07735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_109058138.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2MZF3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2MZF3_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS07740Primary locus identifier stored in the genes table.
Old locus tagJS536_07735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000010.1Sequence record reported by the local genomic context database.
Genomic interval66 773-67 561 nt789 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 773-67 561 ntGCF_018555355::NZ_JAFEJP010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000010.1All displayed genes belong to this local TCS context.
Neighborhood span66 773-67 561 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 773 nt67 561 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JS536_RS07740GCF_018555355#JS536_RS07740
RRAmiR_NasRCurrent focus
66 773-67 561 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003129905#DF196_RS12525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0645064
Simplified PFAM architecture for RROC_0645064
PFAM domain coverage: 161 / 262 aa (61.5%)
1 aa262 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[47-154] | ANTAR[196-248]
- Domain count: 2
- Matched identifier: RROC_0645064
- Positioned domains: Response_reg 47-154 ; Response_reg 47-154 ; ANTAR 196-248 ; ANTAR 196-248
Cluster members and taxonomy
Representative gene: GCF_003129905#DF196_RS12525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key