1 Response_reg#1
4-108 aa · 105 aa · 45.1% of protein
Raw token
Response_reg:4:1.02e-19:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS05750
Response regulator LytTR family
Bifidobacterium sp. SO4 · GCF_018555355
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018555355#JS536_RS05750Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 233 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-223 aa · 86 aa · 36.9% of protein
Raw token
LytTR:138:1.1e-18:223:92:98- Raw architecture: Response_reg:4:1.02e-19:108:108:111#LytTR:138:1.1e-18:223:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018555355::NZ_JAFEJP010000006.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span68545-69246Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_05745RefSeq proteinWP_214356158.1
Context group ID
GCF_018555355::NZ_JAFEJP010000006.1::G00024Context members
JS536_RS05750
Partner locus tags
JS536_RS05750
Partner old locus tags
JS536_05745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_214356158.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS05750Primary locus identifier stored in the genes table.
Old locus tagJS536_05745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000006.1Sequence record reported by the local genomic context database.
Genomic interval68 545-69 246 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 545-69 246 ntGCF_018555355::NZ_JAFEJP010000006.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000006.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span68 545-69 246 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 545 nt69 246 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JS536_RS05750GCF_018555355#JS536_RS05750
RRLytTRCurrent focus
68 545-69 246 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS05750The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1098943
Simplified PFAM architecture for RROC_1098943
PFAM domain coverage: 194 / 233 aa (83.3%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-111] | LytTR[139-224]
- Domain count: 2
- Matched identifier: RROC_1098943
- Positioned domains: Response_reg 4-111 ; LytTR 139-224
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS05750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key