1 HisKA#1
1-54 aa · 54 aa · 24.4% of protein
Raw token
HisKA:1:0.0000997:54:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1H48_RS08635
Histidine kinase, Classic
Clostridioides difficile · GCF_018263955
ClassHKTypeClassicLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018263955#E1H48_RS08635Stable P2CS identifier used across views.
GenomeGCF_018263955Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 221 aa (70.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
110-210 aa · 101 aa · 45.7% of protein
Raw token
HATPase_c:110:1.13e-18:210:101:109- Raw architecture: HisKA:1:0.0000997:54:59:64#HATPase_c:110:1.13e-18:210:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018263955::NZ_SMNL01000001.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1929021-1930714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE1H48_08805RefSeq proteinWP_235699270.1
Context group ID
GCF_018263955::NZ_SMNL01000001.1::G00030Context members
E1H48_RS08635E1H48_RS08640
Partner locus tags
E1H48_RS08635E1H48_RS08640
Partner old locus tags
E1H48_08805E1H48_08810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235699270.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1H48_RS08635Primary locus identifier stored in the genes table.
Old locus tagE1H48_08805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SMNL01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 929 021-1 929 686 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 929 021-1 930 714 ntGCF_018263955::NZ_SMNL01000001.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018263955::NZ_SMNL01000001.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SMNL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 929 021-1 930 714 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 929 021 nt1 930 714 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1H48_RS08635GCF_018263955#E1H48_RS08635
HKClassicCurrent focus
1 929 021-1 929 686 nt · Reverse (-)
E1H48_RS08640GCF_018263955#E1H48_RS08640
RROmpR
1 930 034-1 930 714 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018263955#E1H48_RS08635The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2928445
Simplified PFAM architecture for HKOC_2928445
PFAM domain coverage: 105 / 221 aa (47.5%)
1 aa221 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[105-209]
- Domain count: 1
- Matched identifier: HKOC_2928445
- Positioned domains: HATPase_c 105-209
Cluster members and taxonomy
Representative gene: GCF_018263955#E1H48_RS08635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_018263955
AssemblyASM1826395v1 · Contighaploid
Genome composition4 393 556 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 45 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key