1 SBP_bac_3#1
31-251 aa · 221 aa · 34.7% of protein
Raw token
SBP_bac_3:31:1.21e-40:251:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1H48_RS02410
Histidine kinase, Classic
Clostridioides difficile · GCF_018263955
ClassHKTypeClassicLength637 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018263955#E1H48_RS02410Stable P2CS identifier used across views.
GenomeGCF_018263955Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length637 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 637 aa (60.6%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa637 aa
Domain-by-domain annotation3 items
2 HisKA#2
419-481 aa · 63 aa · 9.9% of protein
Raw token
HisKA:419:0.0000000000000451:481:63:643 HATPase_c#3
530-631 aa · 102 aa · 16.0% of protein
Raw token
HATPase_c:530:1.39e-23:631:103:109- Raw architecture: SBP_bac_3:31:1.21e-40:251:230:224#HisKA:419:0.0000000000000451:481:63:64#HATPase_c:530:1.39e-23:631:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018263955::NZ_SMNL01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span502202-505437Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE1H48_02450RefSeq proteinWP_235699258.1
Context group ID
GCF_018263955::NZ_SMNL01000001.1::G00010Context members
E1H48_RS02410E1H48_RS02415
Partner locus tags
E1H48_RS02410E1H48_RS02415
Partner old locus tags
E1H48_02450E1H48_02455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235699258.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1H48_RS02410Primary locus identifier stored in the genes table.
Old locus tagE1H48_02450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SMNL01000001.1Sequence record reported by the local genomic context database.
Genomic interval502 202-504 115 nt1 914 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span502 202-505 437 ntGCF_018263955::NZ_SMNL01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018263955::NZ_SMNL01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SMNL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span502 202-505 437 nt3 236 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
502 202 nt505 437 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1H48_RS02410GCF_018263955#E1H48_RS02410
HKClassicCurrent focus
502 202-504 115 nt · Forward (+)
E1H48_RS02415GCF_018263955#E1H48_RS02415
RRNtrC
504 115-505 437 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451665#QS3_RS08815Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0860376
Simplified PFAM architecture for HKOC_0860376
PFAM domain coverage: 385 / 664 aa (58.0%)
1 aa664 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[60-277] | HisKA[448-509] | HATPase_c[555-659]
- Domain count: 3
- Matched identifier: HKOC_0860376
- Positioned domains: SBP_bac_3 60-277 ; HisKA 448-509 ; HATPase_c 555-659
Cluster members and taxonomy
Representative gene: GCF_000451665#QS3_RS08815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_018263955
AssemblyASM1826395v1 · Contighaploid
Genome composition4 393 556 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 45 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key