1 Response_reg#1
4-121 aa · 118 aa · 52.7% of protein
Raw token
Response_reg:4:1.01e-24:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KDJ92_RS01485
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_018140675
ClassRRTypeNarLLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018140675#KDJ92_RS01485Stable P2CS identifier used across views.
GenomeGCF_018140675Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 224 aa (77.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-215 aa · 56 aa · 25.0% of protein
Raw token
HTH_LUXR:160:0.00000000000000697:215:56:58- Raw architecture: Response_reg:4:1.01e-24:121:118:111#HTH_LUXR:160:0.00000000000000697:215:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018140675::NZ_CP073283.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span289705-290379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKDJ92_01485RefSeq proteinWP_212104562.1
Context group ID
GCF_018140675::NZ_CP073283.1::G00006Context members
KDJ92_RS01485
Partner locus tags
KDJ92_RS01485
Partner old locus tags
KDJ92_01485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_212104562.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKDJ92_RS01485Primary locus identifier stored in the genes table.
Old locus tagKDJ92_01485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP073283.1Sequence record reported by the local genomic context database.
Genomic interval289 705-290 379 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span289 705-290 379 ntGCF_018140675::NZ_CP073283.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018140675::NZ_CP073283.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP073283.1All displayed genes belong to this local TCS context.
Neighborhood span289 705-290 379 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 705 nt290 379 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KDJ92_RS01485GCF_018140675#KDJ92_RS01485
RRNarLCurrent focus
289 705-290 379 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018140675#KDJ92_RS01485The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1555763
Simplified PFAM architecture for RROC_1555763
PFAM domain coverage: 171 / 224 aa (76.3%)
1 aa224 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[163-215]
- Domain count: 2
- Matched identifier: RROC_1555763
- Positioned domains: Response_reg 4-121 ; GerE 163-215
Cluster members and taxonomy
Representative gene: GCF_018140675#KDJ92_RS01485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_018140675
AssemblyASM1814067v1 · Complete Genomehaploid
Genome composition2 770 240 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key