1 HisKA#1
52-117 aa · 66 aa · 10.2% of protein
Raw token
HisKA:52:1.12e-18:117:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KBH66_RS04310
Histidine kinase, Unorthodox
Anaerostipes sp. · GCF_018053785
ClassHKTypeUnorthodoxLength648 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018053785#KBH66_RS04310Stable P2CS identifier used across views.
GenomeGCF_018053785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage374 / 648 aa (57.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
164-277 aa · 114 aa · 17.6% of protein
Raw token
HATPase_c:164:7.81e-35:277:114:1093 Response_reg#3
306-416 aa · 111 aa · 17.1% of protein
Raw token
Response_reg:306:5.31e-24:416:111:1114 Hpt#4
472-554 aa · 83 aa · 12.8% of protein
Raw token
Hpt:472:0.0000000121:554:83:84- Raw architecture: HisKA:52:1.12e-18:117:66:64#HATPase_c:164:7.81e-35:277:114:109#Response_reg:306:5.31e-24:416:111:111#Hpt:472:0.0000000121:554:83:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018053785::NZ_JAGPKQ010000038.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKBH66_04300RefSeq proteinWP_287499586.1
Context group ID
GCF_018053785::NZ_JAGPKQ010000038.1::G00014Context members
KBH66_RS04310KBH66_RS04315
Partner locus tags
KBH66_RS04310KBH66_RS04315
Partner old locus tags
KBH66_04300KBH66_04305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287499586.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKBH66_RS04310Primary locus identifier stored in the genes table.
Old locus tagKBH66_04300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGPKQ010000038.1Sequence record reported by the local genomic context database.
Genomic interval1-1 947 nt1 947 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 555 ntGCF_018053785::NZ_JAGPKQ010000038.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018053785::NZ_JAGPKQ010000038.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGPKQ010000038.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 555 nt2 555 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 555 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KBH66_RS04310GCF_018053785#KBH66_RS04310
HKUnorthodoxCurrent focus
1-1 947 nt · Forward (+)
KBH66_RS04315GCF_018053785#KBH66_RS04315
RRNarL
1 944-2 555 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018053785#KBH66_RS04310The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0901996
Simplified PFAM architecture for HKOC_0901996
PFAM domain coverage: 355 / 648 aa (54.8%)
1 aa648 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[52-117] | HATPase_c[164-276] | Response_reg[306-414] | Hpt[473-539]
- Domain count: 4
- Matched identifier: HKOC_0901996
- Positioned domains: HisKA 52-117 ; HATPase_c 164-276 ; Response_reg 306-414 ; Hpt 473-539
Cluster members and taxonomy
Representative gene: GCF_018053785#KBH66_RS04310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 872 530 · GCF_018053785
AssemblyASM1805378v1 · Scaffoldhaploid
Genome composition1 714 034 bp · 38,0% GCAnaerostipes sp.
Signal transduction countsGenes 33 · HK 14 · RR 18CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key