1 Response_reg#1
5-114 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:5:3.3e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J7M94_RS05205
Response regulator OmpR family
Thomasclavelia sp. · GCF_017886715
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017886715#J7M94_RS05205Stable P2CS identifier used across views.
GenomeGCF_017886715Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-232 aa · 76 aa · 32.2% of protein
Raw token
Trans_reg_C:157:1.56e-30:232:77:77- Raw architecture: Response_reg:5:3.3e-33:114:111:111#Trans_reg_C:157:1.56e-30:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017886715::NZ_JAGHJL010000023.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1779-4589Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_017886715::NZ_JAGHJL010000023.1::G00024Context members
J7M94_RS05200J7M94_RS05205
Partner locus tags
J7M94_RS05200J7M94_RS05205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003539048.1Primary protein accession used for annex mappings.
UniProt accessionB0N8G7Primary UniProt accession resolved in the annex database.
UniProt IDB0N8G7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ7M94_RS05205Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGHJL010000023.1Sequence record reported by the local genomic context database.
Genomic interval3 879-4 589 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 779-4 589 ntGCF_017886715::NZ_JAGHJL010000023.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017886715::NZ_JAGHJL010000023.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGHJL010000023.1All displayed genes belong to this local TCS context.
Neighborhood span1 779-4 589 nt2 811 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 779 nt4 589 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J7M94_RS05200GCF_017886715#J7M94_RS05200
HKClassic
1 779-3 875 nt · Reverse (-)
J7M94_RS05205GCF_017886715#J7M94_RS05205
RROmpRCurrent focus
3 879-4 589 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS13855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988498
Simplified PFAM architecture for RROC_0988498
PFAM domain coverage: 183 / 236 aa (77.5%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[158-231]
- Domain count: 2
- Matched identifier: RROC_0988498
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 158-231 ; Trans_reg_C 158-231
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS13855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 025 757 · GCF_017886715
AssemblyASM1788671v1 · Contighaploid
Genome composition3 355 068 bp · 31,0% GCThomasclavelia sp.
Signal transduction countsGenes 51 · HK 23 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key